https://padlet.com/articnetwork/vufumapmg1cb2jwe en-us 2023-01-27 09:48:55 UTC 2025-10-02 14:53:07 UTC hello@padlet.com https://padlet-uploads.storage.googleapis.com/1858654646/5a8ad11f8df49efe9dafd1190e3c3a9e/logo_no_text.png sajwilkinson https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2513149517 Disclaimer: The events depicted in this workshop are entirely fictional. Any resemblance to actual persons, living or dead, actual events or outbreaks before or afterwards is purely coincidental. ]]> 2023-03-12 12:53:38 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2513149517 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518129408 tinyurl.com/cadde-workshop]]> 2023-03-15 17:22:00 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518129408 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518141478 2022-09-12: A 30 year old male in Southern California presented to the emergency department complaining of fever, tiredness, aches. On examination he has a temperature of 38.3C and is jaundiced. His ALP is 220U/ml with platelets of 10. Over the course of the day he becomes progressively more unwell and begins bleeding profusely. Viral screen including hepatitis A-E is negative. ]]> 2023-03-15 17:30:47 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518141478 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518144940 http://tinyurl.com/biom25-slido]]> 2023-03-15 17:33:29 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518144940 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518147324 2023-03-15 17:35:23 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518147324 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518147728 Total DNA and RNA extracted from blood of the primary case was sequenced using Illumina technology with paired 150bp reads at a willing academic laboratory that routinely sequences microbial genomes and metagenomes. The sequencing generated around 1M reads in total. There was no target enrichment for specific pathogens. Bioinformatics analysis was performed with Kraken2 of reads searched against Ben Langmead’s “Standard” microbial taxonomic database.]]> 2023-03-15 17:35:41 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518147728 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518160809 2023-03-15 17:45:07 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518160809 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518164369 2023-03-15 17:47:48 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518164369 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518164718 http://tinyurl.com/biom25-slido]]> 2023-03-15 17:48:03 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518164718 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518167918 https://artic-network.github.io/artic-live/gc/case_2_title.html

https://artic-network.github.io/artic-live/gc/case_3_title.html

https://artic-network.github.io/artic-live/gc/case_4_title.html]]> 2023-03-15 17:50:16 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518167918 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518168609 https://artic-network.github.io/artic-live/gc/control_1_title.html

https://artic-network.github.io/artic-live/gc/control_2_title.html

https://artic-network.github.io/artic-live/gc/control_3_title.html]]> 2023-03-15 17:50:42 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518168609 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518182747 https://artic-network.github.io/artic-live/gc/pet_shop_env_title.html]]> 2023-03-15 18:00:28 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518182747 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518183080 https://artic-network.github.io/artic-live/gc/wastewater_seq_title.html]]> 2023-03-15 18:00:44 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518183080 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518188415 2023-03-15 18:04:31 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518188415 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518189089 2023-03-15 18:05:02 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518189089 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518196504 Segment S - https://artic-network.github.io/artic-live/gc/segment_S.fasta.txt

Segment L - https://artic-network.github.io/artic-live/gc/segment_L.fasta.txt

]]> 2023-03-15 18:10:02 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518196504 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518196770 Paste your sequence in the Query Sequence box]]> 2023-03-15 18:10:15 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518196770 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518201518 2023-03-15 18:13:39 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518201518 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518201660 2023-03-15 18:13:46 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518201660 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518202150 Segment L: https://nextstrain.org/community/emmahodcroft/GC/arenavirus/L
Segment S: https://nextstrain.org/community/emmahodcroft/GC/arenavirus/S]]> 2023-03-15 18:14:08 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518202150 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518214108 2023-03-15 18:22:59 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518214108 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518217842 2023-03-15 18:25:52 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518217842 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518218056 https://nextstrain.org/community/emmahodcroft/GC/HMFV/FC]]> 2023-03-15 18:26:02 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518218056 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518231232 2023-03-15 18:35:45 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518231232 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518231492 2023-03-15 18:35:58 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518231492 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518234418 2023-03-15 18:38:20 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518234418 jeremymirzaunifesp https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518235217 2023-03-15 18:38:59 UTC https://padlet.com/articnetwork/vufumapmg1cb2jwe/wish/2518235217