My fearless padlet by Miaomiao Zhou https://padlet.com/miaomiaozhou88/lesson6 Made with magic en-us 2017-03-22 09:38:57 UTC 2017-03-22 11:07:42 UTC hello@padlet.com https://padlet.com/miaomiaozhou88/lesson6 miaomiaozhou88 https://padlet.com/miaomiaozhou88/lesson6/wish/161744633 2017-03-22 09:39:30 UTC https://padlet.com/miaomiaozhou88/lesson6/wish/161744633 hmmsearch https://padlet.com/miaomiaozhou88/lesson6/wish/161763935 #!/bin/bash

#PBS -lwalltime=02:05:00
#PBS -lnodes=1:cores16:ppn=16

cd /home/atgm0009/biocomp/day6
cp Pfam-A.hmm $TMPDIR
cp A_niger_CBS_513_88_current_orf_trans_all.fasta $TMPDIR
cd $TMPDIR
ls -la -h

hmmsearch --cpu 16 --cut_tc --tblout hmmout2.out Pfam-A.hmm A_niger_CBS_513_88_current_orf_trans_all.fasta 

cp $TMPDIR/hmmout2.out /home/atgm0009/biocomp/day6]]> 2017-03-22 11:05:01 UTC https://padlet.com/miaomiaozhou88/lesson6/wish/161763935