Questions you might have about anything in the BMS39-Understanding proteins in 3D course by https://padlet.com/hvenselaar/dadwipg1ztse en-us 2018-03-06 16:42:33 UTC 2018-03-29 22:50:29 UTC hello@padlet.com Feel free to add any questions that come up during this course to this Padlet hvenselaar https://padlet.com/hvenselaar/dadwipg1ztse/wish/238738088 It helps if you add the Day and question number...]]> 2018-03-06 17:01:21 UTC https://padlet.com/hvenselaar/dadwipg1ztse/wish/238738088 Day 1 question 4f e_pasch1 https://padlet.com/hvenselaar/dadwipg1ztse/wish/239758439 Can you explain the figure about structure validation on the rcsb website?
Can you explain again what exactly global and pseudo symmetry / stoichiometry are?]]> 2018-03-08 16:35:41 UTC https://padlet.com/hvenselaar/dadwipg1ztse/wish/239758439 a_offens https://padlet.com/hvenselaar/dadwipg1ztse/wish/239795458 How accurate are predictions of protein structure based on the amino acid sequence? Are mistakes still often made? 

]]> 2018-03-08 17:31:44 UTC https://padlet.com/hvenselaar/dadwipg1ztse/wish/239795458 structure validation a_offens https://padlet.com/hvenselaar/dadwipg1ztse/wish/239802068 what do the variables in structure validation at rcsb.org mean? (eg. Rfree, Clashscore etc)]]> 2018-03-08 17:41:46 UTC https://padlet.com/hvenselaar/dadwipg1ztse/wish/239802068 NMR resolution a_offens https://padlet.com/hvenselaar/dadwipg1ztse/wish/239826700 why is the resolution not described for NMR-determined structures on the rcsb website? ]]> 2018-03-08 18:21:56 UTC https://padlet.com/hvenselaar/dadwipg1ztse/wish/239826700 Day 2 hvenselaar https://padlet.com/hvenselaar/dadwipg1ztse/wish/240098619 LEt's add some questions about day 2 here:]]> 2018-03-09 11:54:51 UTC https://padlet.com/hvenselaar/dadwipg1ztse/wish/240098619 Twisting of beta-sheets hvenselaar https://padlet.com/hvenselaar/dadwipg1ztse/wish/241899320 This has been studied: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC382867/?page=1

]]> 2018-03-14 14:26:57 UTC https://padlet.com/hvenselaar/dadwipg1ztse/wish/241899320 Any questions about week 2 (Databases and BLAST)? Please add them here hvenselaar https://padlet.com/hvenselaar/dadwipg1ztse/wish/244031842 2018-03-20 14:18:41 UTC https://padlet.com/hvenselaar/dadwipg1ztse/wish/244031842 Fun protein video hvenselaar https://padlet.com/hvenselaar/dadwipg1ztse/wish/245453429 https://www.youtube.com/watch?v=tMKlPDBRJ1E]]> 2018-03-23 13:42:09 UTC https://padlet.com/hvenselaar/dadwipg1ztse/wish/245453429 Servers for protein features based on sequence a_offens https://padlet.com/hvenselaar/dadwipg1ztse/wish/245465936 localization of protein: psortb.org
active site prediction:
fuzzy oil drop method
http://www.sbg.bio.ic.ac.uk/3dligandsite/
folding pattern: lenvardb
domain boundary prediction: threadom (based on pdb of similar structures)]]> 2018-03-23 14:02:05 UTC https://padlet.com/hvenselaar/dadwipg1ztse/wish/245465936