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Strips of PodoTech EVA wedge strips in 5 and 3.5 degrees are available from Algeos who are international suppliers. There will also be other suppliers of cork and EVA wedging. 

# data[].attributes.subject
Strips of PodoTech EVA wedge strips in 5 and 3.5 degrees are available from Algeos who are international suppliers. There will also be other suppliers of cork and EVA wedging. 

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https://www.striderite.com/
Good pediatric shoes, have a hard time finding them in stores but online seems to be the place to go.

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Kids Shoes from Stride Rite | Stride Rite

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Shop kids shoes, sneakers, sandals & boots for every season & every stage of their active lives, from baby to big kids shoes. Free shipping!

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Zip closure around the toebox area that makes it very easy to get AFO's into footwear, especially on difficult patients

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Billy Footwear specialise in adaptive shoes that are both functional and inclusive making them great options for kids adults with special needs Their

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Great tool for reviweing C3D files (gait)

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Open-source and cross-platform software to easily analyze biomechanical data.

Reads, writes C3D files and many other formats!

Visualize in 3D and 2D markers' trajectories, force platforms, segments, but also joint angles, forces, moments, as well as analog signals like EMGs.

Finally an easy way to explore data between laboratories and hardwares.

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Mokka - Motion Kinematic & Kinetic Analyzer

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Mokka, motion kinetic and kinematic analyzer, powered by BTK, the open-source Biomechanical ToolKit

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Great tool for analysing musculoskeletal models with applications in CP population.

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The National Center for Simulation in Rehabilitation Research (NCSRR) is a National Center for Medical Rehabilitation Research supported by NIH research infrastructure grants R24 HD065690 and P2C HD065690. OpenSim is also supported by the Mobilize Center, an NIH Big Data to Knowledge Center, grant U54 EB020405, and by DARPA through the Warrior Web Program.

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3D mocap system with smartphones.

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OpenCap is an open source software developed at Stanford University

View the preprint of our manuscript.
‍
Source code will be released upon paper publication.
‍
Kinematics are automatically computed in the cloud now, and utilities for computing forces will be coming soon.
‍

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OpenCap - Musculoskeletal forces from smartphone videos.

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OpenCap is an open source software developed at Stanford University View the preprint of our manuscript.‍Source code will be released upon paper publication.‍Kinematics are automatically computed in the cloud now, and utilities for computing forces will be coming soon.‍

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Simple measurements + GDI with simple video.

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Łukasz Kidziński*, Bryan Yang*, Jennifer Hicks, Apoorva Rajagopal, Scott Delp, Michael Schwartz, "Deep neural networks enable quantitative movement analysis using single-camera videos", Nature Communications (2020)

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Friendly Shoes - friendlyshoes.co.uk

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friendlyshoes.co.uk - Shoes For All Abilities

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~ Easy on & off with our unique zip design
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"The best shoes I've ever worn". Footwear for men, women and kids that is easy to put on and looks good. Free exchanges, VAT exemption and 5* customer service.

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Upload mocap files and get an optimally scaled OpenSim model and IK back in minutes. Share your data with the community. Browse and download biomechanics data.

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Lectures by Professor Scott Delp of Stanford University.

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Share your videos with friends, family, and the world

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A curated, public list of resources for biomechanics and human motion analysis: datasets, processing tools, software for simulation, educational videos, lectures, etc.

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Still a work in progress (might include incomplete descriptions), but contributions are welcome at any stage! 😍

Anatomy Standard by Jānis Šavlovskis and Kristaps Raits (2020). Project aiming at creating an evidence-based 3D model of the human body, create high-quality, interactive illustrations of the model, and share them here to provide a resource for teaching and explaining anatomy. Images are licensed under the Creative Commons Attribution-NonCommercial 4.0 International License.

Muscle Atlas by the Dept of Radiology of the University of Washington. The medical illustrations contained in this online atlas are copyrighted © 1997 by the University of Washington but receiving a license to use these images is generally quite easy, particularly for academic and scholarly purposes. For more information and obtaining a license see this link.

ASB Teaching Repository by the American Society of Biomechanics. Does not require membership to access.

Biomechanics Toolbar by Jos Vanrenterghem (2016). The Biomechanics Toolbar is freeware designed to make data processing more accessible for undergraduate teaching. It works as a traditional toolbar in Microsoft Excel.

Scientific Animation of Muscle Contraction by Brule Design Studio. Press Demo to try it.

Scientific Animation of Human Locomotion by Brule Design Studio. Press Demo to try it.

Kwon3d website: website with theory about most basic topics in biomechanics.

GitHub resources for teaching: GitHub offers support for automating certain aspects of teaching.

How to review a paper from Science Magazine.

How to write a systematic review for Health by the University of Tasmania.

Kuo's course homeworks: interesting homework materials used in Art Kuo's courses (public on GitHub).

Trajectory Optimization Toolbox by Matthew Kelly, including some excellent examples and some course materials.

Notes on Scientific Computing for Biomechanics and Motor Control by Marcos Duarte and Renato Watanabe. A beautiful collection of lecture notes and code on scientific computing and data analysis for Biomechanics and Motor Control in the form of Jupyter notebooks (python).

Optimal Control Workshop by BJ Fregly. Files distributed at the NSF-funded Optimal Control Workshop held on July 9, 2015 at the University of Edinburgh as part of the XV International Symposium on Computer Simulation in Biomechanics.

OpenSim teaching Hub by the OpenSim Team. Includes materials from the Neuromuscular Biomechanics Lab in the Department of Bioengineering at Stanford University. Does not require membership to access.

ODE Integration Best Practices With Octave/Matlab by by Jason Moore from his EME 171: Analysis, Simulation and Design of Mechatronic Systems course at UC Davis.

Teaching and Learning with Jupyter by Lorena Barba et al. (2019). This is a collaboratively written book including explanations and examples on many key topics of interest for those interested in using Jupyter in the classroom.

Tips for setting up remote lessons by Grant Sanderson, from the 3blue1brown Youtube Channel.

Tutorial: 3D Kinematics and Inverse Dynamics MATLAB scripts by Raphael Dumas, including some examples.

Tutorial: Musculoskeletal Model for Simulation of Walking by Van den Bogert's tutorial (Dynamic Walking, 2011), including a section on computational muscle modelling and one on walking simulation using a 2D musculoskeletal model.

Tutorial: Kane's Method for an inverted pendulum by Ross Miller. A tutorial on Kane's Method for deriving equations of motion, demonstrated on an inverted pendulum.

Set of MATLAB/Python models shared by Ross Miller (2019-2020):

Bayesian Data Analysis course by AKi Vehtari at Aalto University (2020).
💾 code |📄 book

Anybodyrun by AnyBody Technology. This is a website where you can generate videos of full-body models of running based on principal components analysis. The approach behind the application is described on John Rasmussen's blog.

The Open Research Scan Archive (formerly: Penn Cranial CT Database) by the University of Pennsylvania Museum of Archaeology and Anthropology (curators: Thomas Schoenemann and Janet Monge). contains high resolution (sub-millimeter) scans of human and non-human crania from the Penn University Museum and other institutions. The collection includes approximately 1800 crania (1200 from the Samuel George Morton Collection, then extended by J. Aitken Meigs).

💻 website

Normative gait data from Chris Kirtley's website on clinical gait analysis. Website does not seem maintained.
💻 website

2-D walking: kinematics and force plate data by David Winter. Originally published as Appendix in the book Biomechanics and Motor Control of Human Movement, 2nd edition, John Wiley & Sons, 1990.
💻 website | 📀 dataset

Orthoload by the Julius Wolff Institute of the Charité in Berlin. This online dataset includes loads occuring in human joints measured directly in patients by using instrumented hip, knee, shoulder and spinal implants. OrthoLoad supplies numerical load data and videos, which contain load-time diagrams and synchronous images of the subject's activities. No joint kinematics available outside larger cooperative projects, except few sample data:.
📄 publication list | 📀 dataset hip | 📀 dataset knee | 📀 dataset shoulder | 📀 dataset spine | 📀 sample comprehensive | 💻 website

HIP98 by Georg Bergmann et al. (1998). The data collection CD-ROM HIP98 contains the forces acting in the hip joint during the most common activities of daily living. Measurements were taken 1998 in 4 subjects (implant loads, synchronous videos, gait analysis data, calculated muscle forces, EMG signals and numbers for the frequencies of the different activities).The loads acting in a 'typical' or representative subject are also provided. Issues in installing the database in recent Microsoft operative systems. The data will be extracted but the GUI will not work.
📄 paper | 📀 dataset | 💻 website

CAMS-KNEE by William Taylor et al. (2017). Datasets collected on a cohort of 6 subjects with instrumented knee implants (Charité - Universitätsmedizin Berlin) synchronized with a moving fluoroscope (ETH Zürich) and other measurement techniques (whole body kinematics, ground reaction forces, video data, and electromyography data) for multiple complete cycles of 5 activities of daily living. Data must be requested submitting a project description. I was NOT granted access to the entire data set for exploring the dataset.
Link to live dataset is broken.
📄 paper | 💿 data request | 💿 live dataset (CAMS-KNEE workshop) | 💻 website

Shoulder movements database by Bart Bolsterlee et al. (2013). Data for five subjects (2 females, age 29.2 ± 2.3 year, height 176.3 ± 7.2 cm) performing range of motion and activities of daily living for the shoulder. Dataset includes kinematic, force and EMG data. A user guide and Matlab scripts are also available.
📄 paper |📀 dataset |💻 website

A large calibrated database of hand movements and grasps kinematics by Néstor J. Jarque-Bou et al. (2020). The dataset includes calibrated kinematic data for 77 subjects and 40 movements (each repeated several times), resulting in the largest available kinematic dataset. The dataset derives from three multimodal datasets, previously released (Ninapro DB1, DB2 and DB5, that include electromyography, inertial and dynamic data). Hand kinematics was measured for all subjects using a 22-sensor CyberGlove II data glove.
📄 paper |📀 dataset |⭐ code

CAST

IORGait

LAMB by Marco Rabuffetti et al. (2019).

SAFLo

T3Dg

Marker Trajectory Gap filling

Inertial Measurement Units

Automatic fascicle tracking algorithm by Drazan et al. (2019). The links include all the experimental data, tracking code, and tracked trials reported in the publication, presenting an automatic fascicle tracking algorithm quantifying gastrocnemius architecture during maximal effort contractions.
📄 paper | 📀 dataset and paper code | 💾 source

Multibody and Physics Engines 😴↙️🍎

MyoSim by the Campbell Lab. MyoSim is an open source computer software for modeling the mechanical properties (force, shortening, power output) of striated muscles. The software models the behavior of half-sarcomeres by extending Huxley-based cross-bridge distribution techniques with Ca2+ activation and cooperative effects. MyoSim can also simulate arbitrary cross-bridge schemes set by the researcher.
📄 paper | 💻 webpage | 💾 installation package (includes source)💾 source (MATLAB version)

Neuro-musculoskeletal Simulation Software 🧠➡️🦵

Neuromusculoskeletal Simulation Tools 🧠🔨

3DSlicer 3D Slicer is an open source software platform for medical image informatics, image processing, and three-dimensional visualization.
📄 paper (Slicer v4) |💻 website |📄 Documentation |📹 Youtube tutorials
Extensions of 3DSlicer:

SlicerMorph by Sara Rolfe et al. (2020). SliceMorph is a toolkit with the aim of retrieve, visualize, measure, annotate, and perform geometric morphometric analyses from high-resolution specimen data both from volumetric scans (CTs and MRs) as well as from 3D surface scanners effectively within 3D Slicer.
📄 preprint |💻 website |💾 source |📹 tutorials

SlicerSALT (Slicer Shape AnaLysis Toolbox) by Vicory et al. (2018). SlicerSALT is open-source, free comprehensive software design for biomedical scientists to precisely locate shape changes in their imaging studies. SlicerSALT will enhance the intuitiveness and ease of use for such studies, as well as allow researchers to find shape changes with higher statistical power.
📄 paper |💻 website and tutorials |💾 source

Dragonfly by Object Research Systems. Dragonfly is a software platform for the intuitive inspection and processing of multi-scale multi-modality image data. Includes a Deep Learning tool for training deep models for image segmentation and regression tasks. It also offers rendering capabilities and extensibility through Python.
💻 website |📹 Video tutorials

ITK-Snap -📄 paper |📹 Video tutorials

InVesalius -📄 paper list |📹 Youtube tutorials

Materialise Mimics (commercial)

MITK -📄 paper |📄 tutorials

MITK-GEM is based on MITK but includes also mesh processing functionalities. Aimed to generation of finite element models.
📄 paper |💻 website |⭐ resources

Rhino3Dmedical commercial.
📷 webinar

SASHIMI Segmentation 🍣 by Bart Bolsterlee. SASHIMI Segmentation is a MATLAB App for segmentation of multi-slice images.

Seg3D

Simpleware ScanIP (commercial).

MeshLab - TO ADD PAPER

SlicerSALT (Slicer Shape AnaLysis Toolbox) by Vicory et al. (2018). See description on 3DSlicer extensions section.

Trimesh by Michael Dawson-Haggerty et al. (2019). Trimesh is a pure Python (2.7-3.4+) 🐍 library for loading and using triangular meshes with an emphasis on watertight surfaces. The goal of the library is to provide a full featured and well tested Trimesh object which allows for easy manipulation and analysis.
💻 website | 💾 source

mri2psm by Manish Sreenivasa (2016). Open-source toolchain to create patient-specific models from MRI images.
📄 paper ( MRI2PSM, an open-source toolchain to create patient-specific rigid body models from MRI images. is cited in the paper, but not retrievable). | 💾 source

Musculotendon parameter optimizer by Luca Modenese et al. (2016). Optimization based technique that adjusts muscle parameters of musculoskeletal models. It can be used to improve linearly scaled models or to obtain reasonable estimation of optimal fiber lengths and tendon slack lengths in models generated from medical images.
📄 paper | 📀 dataset | 💻 website | 💾 source (MATLAB) | 💾 source (OpenSim plugin) with documentation

Deformetrica is a software (Python tool 🐍) for the statistical analysis of 2D and 3D shape data. Deformetrica comes with three main applications: registration, atlas construction and geodesic regression.
📄 list of papers | 💻 website | 💾 source

Musculoskeletal Atlas Project (MAP) by Ju Zhang et al. (2014). Open-source software framework in Python 🐍 with plug-in architecture for creating musculoskeletal models. The client-side application (MAP Client) facilitates dicom and motion capture integration, registration tools, and meshing capabilities, and uses statistical shape modelling (based on the Melbourne Femur Collection, which consists of 320 full body CT scans) to provide a best-match to mocap and medical imaging data and generate surface geometry to generate an OpenSim model. Not maintained.
📄 paper | 💻 website | 💻 docs | 💾 source | ⭐ plugins

SPHARM-PDM Toolbox is a tool that computes point-based models using a parametric boundary description for the computing of Shape analysis. It is now available as a 3D Slicer extension and as part of SlicerSALT module.
💻 SPHARM-PDM website | 💻 SlicerSALT website | 💾 source

GIBBON Toolbox by Kevin Moerman. GIBBON (The Geometry and Image-Based Bioengineering add-On) is an open-source MATLAB toolbox that includes an array of image and geometry visualization and processing tools and is interfaced with free open source software such as TetGen, for robust tetrahedral meshing, and FEBio and Abaqus for finite element analysis. The combination provides a highly flexible image-based modelling environment and enables advanced inverse finite element analysis.
📄 paper | 💻 website | 💾 source

Surrogate Contact Modeling Toolbox by Ilan Eskinazi and Benjamin Fregly (2016). This opensource toolbox provides researchers with the capabilities to construct and use surrogate contact models, including multiple domains for sampling including out-of-contact configurations, a multi-threaded sampler that makes use of FEBio's contact modeling capabilities, flexible specification of surrogate model inputs and outputs, and architecture, parallelized training, testing module and surrogate models portable as DLLs.
💻 website | 💾 source 💻 website

Gridap: An extensible Finite Element toolbox in Julia by Santiago Badia1 and Francesc Verdugo (2020).
📄 paper | 📄 Users' Guide | 💾 code/source

This section needs to be improved.

Paraview

Mayavi - Python tool 🐍

OpenCmiss

MicroDicom: MicroDicom is application for primary processing and preservation of medical images in DICOM format. It is equipped with most common tools for manipulation of DICOM images and it has an intuitive user interface. Free for use and accessible to everyone for non-commercial use.

Reproducibility PI Manifesto by Lorena Barba (2012). Slides of the talk Reproducibility in Computational and Experimental Mathematics at the ICERM workshop outlining a list of commitment that principal investigators could take to ensure reproducibility.
💻 website | 📄 blog-repro-pack-example | 📊 slides

Resources that helps in choosing a license for shared resources:

Choose a license by GitHub Inc. This is a website with can help you choosing the license for your shared data based the intended use that you want to allow.

CreativeCommons by Creative Commons. This website can guide you in the process of choosing a Creative Commons license based on your preferences.

Have anything in mind that you think is awesome biomechanics and would fit in this list? Feel free to send a pull request or open an Issue.

Feel free of contributing as by standard GitHub workflow:

1. forking this repository

2. creating your own branch, where you make your modifications and improvements

3. once you are happy with the new feature you have implemented create a pull request

If you want to contribute but you are not familiar with Git, the Software Carpentry Lessons are a perfect place to start with Git and GitHub.

If you have used Git before but you are not familiar with GitHub, you can check resources like "First Contributions" and learn how to contribute to existing projects.

If you are adding elements please use (roughly) this template or the format of similar items in the same subsection of the list:

* **Template: DatasetName** by Authors (year). Description. [![DOI](yourZenodoDOI)]</br> :page_facing_up: [paper](doi/link_to_paper) | :dvd: [dataset](link_to_dataset) | :computer: [website](link_to_website) | :floppy_disk: [code/source](link_to_source_code) | :star: [resources](link_to_resources)

so that it will look roughly like this:

To the extent possible under law, Luca Modenese has waived all copyright and related or neighboring rights to this work.

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Still a work in progress (might include incomplete descriptions), but contributions are welcome at any stage! 😍 Anatomy Standard by Jānis Šavlovskis and Kristaps Raits (2020). Project aiming at creating an evidence-based 3D model of the human body, create high-quality, interactive illustrations of the model, and share them here to provide a resource for teaching and explaining anatomy.

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Durch die Nutzung unserer Dienste erklären Sie sich damit einverstanden, dass wir Cookies setzen. Weitere Informationen

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Diese Website verwendet Cookies. Cookies helfen uns bei der Bereitstellung unserer Dienste. Durch die Nutzung unserer Dienste erklären Sie sich damit einverstanden, dass wir Cookies setzen. Weitere Informationen OK

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Here's what people are saying about Drew "When I bought my first pair of Drew orthopedic shoe 25 years ago, the salesman said I would never want to wear anything else and he was right..." VIEW ALL

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These work great with orthotics, but are also great for regular wearing.

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Toddler Shoes | Buy Kids Shoes Online | See Kai Run

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Shop for a pair of toddler shoes at See Kai Run to find sneakers, dress shoes, waterproof boots, or sandals designed to promote healthy foot development.

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Stride Rite, See Kai Run, New Balance (990, 888 models)

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Stride Rite, See Kai Run, New Balance (990, 888 models)

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Birmingham UK

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All the popular trainer brands have something that will suit many chidren

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All the popular trainer brands have something that will suit many chidren

# data[].attributes.headline
Strips of PodoTech EVA wedge strips in 5 and 3.5 degrees are available from Algeos who are international suppliers. There will also be other suppliers of cork and EVA wedging. 

# data[].attributes.subject
Strips of PodoTech EVA wedge strips in 5 and 3.5 degrees are available from Algeos who are international suppliers. There will also be other suppliers of cork and EVA wedging. 