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Vader dies, and is in his ghost form by his old master and Yoda. When Anakin truly died it was when he was manipulated by Palpatine and lost him self in his feelings. Anakin, in the end won back himself and was able to be their with his old friends instead of just disappearing, also Anakin has the knowledge of the Dark Side.

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Vader returns to the Light Side after some moments and proceeds to save his son from the wicked Palpatine. Vader, as he dies tells his son to tell his sister that he was right.

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Vader, sits back as Death Sidieous attempts to make his son submit. Vader watching his son being zapped makes him begin to question what he has done, what he has sacrificed. Yet, Vader realizes that none of this is what he wanted, and Luke was a wake up call to him.

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Luke mentions that Vader is "conflicted" with himself about what he has done. Vader refuses to listen to his son, and turns his son over to Darth Sidieous. Vaders' magic flight moment is his feelings, the same feelings that encased him in his dark home.