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To disambiguate people and link them to their publications

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For referencing people, things, place etc.

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To explore to cover phenotypic information

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Curating scientific authors of interest, plus other Biodiversity related data.

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Teaching SPARQL and Linked Data concepts

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Teaching SPARQL and Linked Data concepts

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I use wikidata as the source of information about collectors of biological specimens. I use a ruby-based client, which calls the SPARQL endpoint. The flavour of these can be characterized by: "What is new in wikidata that I was unaware of?" and "What is changed in wikidata for the items I care about since the last time I checked?"

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extending the shared knowledge that we use as a platform for our research

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extending the shared knowledge that we use as a platform for our research

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Used in onto refine to translate datasets values to Wikidata urls

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WD could be used (more) to link to multiple genome related data and concepts e.g. Reference genomes, representative genomes, genome publications, Pan-genomes etc etc

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understanding the substrates and products of enzymic reactions

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Querying across taxa to find pathways completed by multiple taxa in complex symbioses (e.g. lichens)

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we know we talk about the same things, when we reference them by their WD-id

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Yes, as inspiration or critical mass of data in linked data approaches

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Yes, as inspiration or critical mass of data in linked data approaches

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Genomes are often obtained from samples with specific information, location, conditions.

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Wikidata is clearly not the only linked data store where we could collaborate

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Many of the topics mentioned could "blow up" Wikidata, explore distributed wiki bases?

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Use data dumps to collate data - find it too easy to write queries that timeout on the web interface

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As a key integrator of disparate sources of data, provided members of each stakeholder community have agreed upon their key concepts/integrators. If these are unknown at present then properties should be proposed to the wikidata community to facilitate that integration.

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Identify missing wikipedia articles on taxa

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Identify missing wikipedia articles on taxa

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Develop tools for improved addition of new items for articles or books using DOIs or ISBN numbers. Maybe could be an add-on for cradle, where some of the properties are automatically populated using a supplied ISBN etc?

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Translate database terms into many languages

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Translate database terms into many languages

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Make it simpler to get an overview of a given topic

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Make it simpler to get an overview of a given topic

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Several suggestions in the bottom section of the Google doc

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Several suggestions in the bottom section of the Google doc

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As a source of bibliographic data that can be used for sciencometrics

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As a source of bibliographic data that can be used for sciencometrics

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This also makes it easier to actually provide reference information, so as to support detailed provenance.

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Standardized information about type specimens

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Standardized information about type specimens

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Many applications are focused on Wikidata but wikibase support is not always there or not clear.

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Define the key items & what are their expected properties. If these are lacking in wikidata, create/launch a consortium of stakeholders & involve wikidata admins in the process who will be sensitive to scalability.

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But is has gotten a lot better in the last year(s). There is a lot of activity by the Wikidata/Wikibase - Team of Wikimedia with the focus on wikibase.

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All species (metadata) and genome (metadata) in an instance

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Standardized information about species distributions (or even molecularly characterized populations)

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Standardized information about species distributions (or even molecularly characterized populations)

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With key parameters being
- time frame
- native vs. introduced vs. invasive
- determination method

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Planning databases to collate taxon metadata. Community editing tools would be good - Likely a wiki base instance as it sounds like incorporating all needed new ontology terms into main Wikidata may take longer than funding cycle

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http://www.sciencestories.io/

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Integrating a workflow with Wikidata provides an avenue to make that workflow (more) FAIR.

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Integrating a workflow with Wikidata provides an avenue to make that workflow (more) FAIR.

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I came to #WikiCite on Eurowings - their moving map is "Powered by the magic of @Wikidata"!

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I came to #WikiCite on Eurowings - their moving map is "Powered by the magic of @Wikidata"! https://t.co/X5mMGsmBmw

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I came to #WikiCite on Eurowings - their moving map is "Powered by the magic of @Wikidata"! pic.twitter.com/X5mMGsmBmw
— Andy Mabbett (@pigsonthewing) May 24, 2017

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I came to #WikiCite on Eurowings - their moving map is "Powered by the magic of @Wikidata"! https://t.co/X5mMGsmBmw

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I came to #WikiCite on Eurowings - their moving map is "Powered by the magic of @Wikidata"! https://t.co/X5mMGsmBmw

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I came to #WikiCite on Eurowings - their moving map is "Powered by the magic of @Wikidata"!

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with X being specimens, sequences, supernovae etc.

Wikidata has a way to state that as "always incomplete"

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Poachers read open data too

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Federate usage beyond Wikidata and Wikibase

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Federate usage beyond Wikidata and Wikibase

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Create a linked data landscape that spreads accross Wikidata/Wikibase on one side and other triple store on others

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A frontend script *could* call wikidata in real-time, which puts strain on the wikidata infrastructure. But, one could also plan for an arm's length cache and resync. The former might be fruitful for a quick proof-of-concept, but as a project matures, the latter could be desirable.

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Positive feedback loops between mining/entity recognition workflows and Wikidata

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Positive feedback loops between mining/entity recognition workflows and Wikidata

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e.g. some databases take into account stereochemistry (and Wikidata can do that too) but many others don't, which raises mapping issues known as the "Bonnie and Clyde problem" https://meta.wikimedia.org/wiki/Community_Wishlist_Survey_2019/Wikidata/Solution_to_the_%E2%80%9FBonnie_and_Clyde%E2%80%9D_problem

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Community Wishlist Survey 2019/Wikidata/Solution to the ‟Bonnie and Clyde" problem - Meta

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Problem: Wikidata can only link one article per language. There are, however, cases where a single article in one language corresponds to two articles in some other language. A prototypical instance is Bonnie and Clyde, with most languages having an article about the duo Bonnie and Clyde, some having an article about Bonnie Parker, and some having an article about Clyde Barrow (see also d:WikiProject Cross Items Interwikis).

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The mess from linking helps make the problems obvious

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The mess from linking helps make the problems obvious

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Some visualizations/ maintenance queries can reveal data quality issues

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Some visualizations/ maintenance queries can reveal data quality issues

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e.g. localities of high-altitude specimens that are in the middle of the ocean due to some formatting mishap with the geodata

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Lots of the Wikidata tools are effectively serving as citizen science projects

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Lots of the Wikidata tools are effectively serving as citizen science projects

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BiCIKL-type infrastructures could provide mirrors of Wikidata

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BiCIKL-type infrastructures could provide mirrors of Wikidata

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perhaps with different specs, e.g. trading higher execution times for lower update frequencies and such

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The ethics of profiling people and other entities in such a public place have not yet been explored comprehensively

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The ethics of profiling people and other entities in such a public place have not yet been explored comprehensively

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e.g. as per https://doi.org/10.7554/eLife.70780

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The LOTUS initiative for open knowledge management in natural products research

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The LOTUS initiative builds, through the Wikidata knowledge graph, a virtuous cycle of data sharing practices for natural products research.